CDS
| Accession Number | TCMCG016C11058 |
| gbkey | CDS |
| Protein Id | OMO82667.1 |
| Location | complement(join(3235..3465,3556..3722,3898..4036,4135..4297,4865..5013,5147..5372,6364..6547,6696..6847,7315..7454,7893..7949,8056..8103,8461..8589,8704..8791,8914..9112,9455..9638,9967..10041,10502..10628,10753..10894,10994..11306)) |
| Organism | Corchorus capsularis |
| locus_tag | CCACVL1_11817 |
Protein
| Length | 970aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA215142; BioSample:SAMN03290679; |
| db_source | AWWV01009972.1 |
| Definition | RNA-dependent RNA polymerase, eukaryotic-type [Corchorus capsularis] |
| Locus_tag | CCACVL1_11817 |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGGTTGTAATTCTTCCTCAAACTGTAGAAGCGGCAATTTCCAGAATATGTAGTGAGCGCAATCTACCGCCGCTGCTTGACTCAACGAGGCAAGCTCTTTATGAAGTAGGCGAGGCCGAATCATTAATTACATTGAAGAAAATCGGAGAGACAAAGGAGAAAATTCGATCATTTGATAAATTTGTAATGTATTTTATAGTAAGAAATAGGCCAAACTGCAACCCTTCTCCTCAAAAACGACCCAGTCCTTCTTCTATCTCCAGCCCCTTCTCTTCTCCTGGTAAAATCGTCAGAATGATGATGAGTTCTCCAGGGAAAGATAACAGAGCTGTTCAGACCTCTGCTACTTCTCTGACTCCAAGTTCTTCATCGGGGGGAAGTTTTAGCCCTCAATTAGTAGCCTTGGGGGAGCTTCAGTTTAGGAAAGCCTTTCTTTTATTGAATTACATTGGCTCGGAAACGCTGGAAAATTTATGTACTGCCAATGAAATTCGAGACCTAAAAGATTTGGCGATGGATGAGTTCGAACAAAAAGTATGGGTTTCTAAGGGCAGAATTTTTAGCCCATCTGGCCGCTGTAAGTCATCTGAGTGGGAGTCTGGAATGACTCATAATTACTATTGTCACGTCTCTGAAGACGGAAGTTATACGTTCAAGGGCCCATACCTAGACAAGTCTAGAAATCATTTGCAAAGGGTTTTGGGTGATGAAAATGTTCTCAATGTGAAGTTTGCAGATATCACGGATGATAAAAGTTCAACTTGCATTGATCCTTATGAGAATTACAGAAGGATTGCAAGAGATGGAATTACTGTCGGTTTGCGTCATTTCAGATTTTTTTTGTTTAAGGATGGAGGTAAAGAAGCACGAAAGAAAGATGCAACATCCTCCTCGGTGAGGTGCTTCTTTGTTCGGTTCGAGTCTCATGCACACATCGACAATGGTGAAGAATATGTTTTATCCGGAAAGACGATTCAACAGGCCAGAAGTATGTTTATGCATATTCATACCATGCCAAATGTGGCCAAATATATGGCCAGATTTTCTCTAATCCTGTCAAAGACCATGAAGCTGGAAGTTGACATGAAACAAGTCGACGTTAAGGAAATAGATGATATAGCTTGTAGGGATGAAGATGGAAAGCCTGTTTGTAATAATAACGGAGAACCACGGATTCTTACAGATGGAACTGGTTATATATCAGAGGATTTGGCATTGAAATGCCCAAAGGATGTCTACAAAGGAAGCATTGTTAAGGGCAAGCTGTCAGGCATGAATACGACAGAACCACATCATAGGGTACCGTTTCGACTCTTTAACAATGGTTTTGCCGTCAAGGGAACCTTGCTTGTGAATAAAAAGCTCCCACGCAGAACCATTGAAATTCGGCCTTCGATGATCAAAGTTAGGCCAGAAGTTCCAGATCCAGAGTCAGATCCAAAGCCAGATCCAAAGCTGTCAAATCCATGCACAATAAATTCACTGGAAGTAGTTACAACAAGTAATCAGCCAAAAAAATACACTTCTCTTTCAAAGGATATGGTTGCACTACTCAGCTATGGAGGTGTACCTGATGACTTCTTTATGGAAATATTGAAGAATAAATTAGAGGAGTCACAGTCTGTTTTCACAAACAAACGCACAGCACTTAAAGCAGTAATGATTTTAAAAGGAATTCCCCTTAATGAGTCATACTTGCAGTATCGAATGTCAATTATGTTGAATGAGGAAAGGAAGAGTCTTCGAAAAGGAAAGCTCCCCATACCTGACTCCTATTATTTAATGGGTACTGTTGATCCATCTGGAGTCCTGGAAAGTGATGAAGTCAGCATTATCTTGGATGATGGACAGATTTCGGGGAAAGTGCTTGTATACCACCCACCTGGTTTACATTTTGGAGATATACATGTCTTGAATGCTAAATATGTGGCAGCCTTGGATGAATTTGTTGGAGAGGGAAAGTATGGTATATTCTTTTCGTGTAAAGGTCTGCGCTCTAAGGCTGATGAGATGGCTGGGGCTGACTTTGATGGTGATCAATTTTTCGTATCAAGAAACGCCCAGTTATTGAAATACTTCAAAGTAAGTGAACCGTGGATAGAAAAGACTTCTACTTCAAGAGTGTGCAGTAAAAAATTATGTGATCTTTCAAAGGAGGAGGAGTTGGAAGCTGAGCTCTTCAGAACATTCTTGAATTTGAGGTTTCAGCCAAGTTATGCCCTGTCTAATGCATCTCATTGCTGGACGGCAATAATGGACCGCTTACTTACAATGAAAGATGGAAGCCCTGATGAGCAAGATCTGGTAAAGAAGAACCTGCTAAGATTGGTGGATATATATTATGAGGCGTTGGATGCACCGAAGAATGGAAAAAAGATTGAAGTTCCACCACACTTGAGAGTGGATGTATTCCCGCACTACATGGAAAAGGAAAACTCTTTCGTATCGACTTCAATCTTGGGAAAAATATATGATTTTGTCAAATCATATGGAGAAGAACAGTCCAAGAATATAGAGGTTCGAAAGCTCCCGTTGTTCGAGGGTGGCTTTACCGAGGAAAGTAAAACGAAATGGAGTGATCATTATAAGCAGTACAAGCAAGACATGACGAGTGCTTTGTCTGGCAAGACCAAAGAAGAGAGGGAAGAAGCTGCCAATGCAGTTTATAATAATTACAAGAAGATATTGTATGGAACAGCAGAGAAAGAAAGGCCTGTTGACAAAATCTACGAGGAAGCTCGAGCGATTTACAATGTTTGTTATGATCATGCTCGTGAAATTGAAGAAGTGGGGAAATGCGGGTTCGCATGGAAAGTTGCTGGACGTGCTCTCTTAGACATGTATGTCTCAGAACAGGGTGGTAATGACATGTTACTGTCATGTTCACTTAATGTCTTGAAAGAGCTCCTTTAA |
| Protein: MVVILPQTVEAAISRICSERNLPPLLDSTRQALYEVGEAESLITLKKIGETKEKIRSFDKFVMYFIVRNRPNCNPSPQKRPSPSSISSPFSSPGKIVRMMMSSPGKDNRAVQTSATSLTPSSSSGGSFSPQLVALGELQFRKAFLLLNYIGSETLENLCTANEIRDLKDLAMDEFEQKVWVSKGRIFSPSGRCKSSEWESGMTHNYYCHVSEDGSYTFKGPYLDKSRNHLQRVLGDENVLNVKFADITDDKSSTCIDPYENYRRIARDGITVGLRHFRFFLFKDGGKEARKKDATSSSVRCFFVRFESHAHIDNGEEYVLSGKTIQQARSMFMHIHTMPNVAKYMARFSLILSKTMKLEVDMKQVDVKEIDDIACRDEDGKPVCNNNGEPRILTDGTGYISEDLALKCPKDVYKGSIVKGKLSGMNTTEPHHRVPFRLFNNGFAVKGTLLVNKKLPRRTIEIRPSMIKVRPEVPDPESDPKPDPKLSNPCTINSLEVVTTSNQPKKYTSLSKDMVALLSYGGVPDDFFMEILKNKLEESQSVFTNKRTALKAVMILKGIPLNESYLQYRMSIMLNEERKSLRKGKLPIPDSYYLMGTVDPSGVLESDEVSIILDDGQISGKVLVYHPPGLHFGDIHVLNAKYVAALDEFVGEGKYGIFFSCKGLRSKADEMAGADFDGDQFFVSRNAQLLKYFKVSEPWIEKTSTSRVCSKKLCDLSKEEELEAELFRTFLNLRFQPSYALSNASHCWTAIMDRLLTMKDGSPDEQDLVKKNLLRLVDIYYEALDAPKNGKKIEVPPHLRVDVFPHYMEKENSFVSTSILGKIYDFVKSYGEEQSKNIEVRKLPLFEGGFTEESKTKWSDHYKQYKQDMTSALSGKTKEEREEAANAVYNNYKKILYGTAEKERPVDKIYEEARAIYNVCYDHAREIEEVGKCGFAWKVAGRALLDMYVSEQGGNDMLLSCSLNVLKELL |